miRBase entry: ath-MIR5632

Stem-loop ath-MIR5632


Accession
MI0019204
Description
Arabidopsis thaliana ath-MIR5632 precursor miRNA


Sequence

UUGAUUCUCUUAUCCAACUGUaaauccgaaacccuaauauuccuuguaccacauuccuaaucaacuaggcuugagcccgaaaaacaaaaacaaaaaaaacaguaggaaugugguucaaggaaaauuaguguUUGGAUUUAUAGUUGGAUAAGagaaucaa
.((((((((((((((((((((((((((.((((.(((((.(((((((.((((((((((((........(((....))).(.....).................)))))))))))).))))))).))))).)))))))))))))))))))))))))))))).

Structure
U                          g    c     a       u            -----------------aucaacua   u 
 UGAUUCUCUUAUCCAACUGUaaaucc aaac cuaau uuccuug accacauuccua                         ggc u
 |||||||||||||||||||||||||| |||| ||||| ||||||| ||||||||||||                         |||  
 acuaagaGAAUAGGUUGAUAUUUAGG UUug gauua aaggaac ugguguaaggau                         ccg g
a                          -    u     a       u            gacaaaaaaaacaaaaacaaaaagc   a 


Annotation confidence Not enough data
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Genome context
chr2: 8392449-8392608 [-]

Database links

Mature ath-miR5632-3p

Accession MIMAT0022392
Description Arabidopsis thaliana ath-miR5632-3p mature miRNA
Sequence 132 - UUGGAUUUAUAGUUGGAUAAG - 152
Evidence experimental
Illumina [1]

Mature ath-miR5632-5p

Accession MIMAT0032127
Description Arabidopsis thaliana ath-miR5632-5p mature miRNA
Sequence 1 - UUGAUUCUCUUAUCCAACUGU - 21
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176

  2. PubMed ID: 24119003
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
    Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
    BMC Genomics (2013) 14:701