Stem-loop ath-MIR5633

Accession

MI0019205

Description

Arabidopsis thaliana ath-MIR5633 precursor miRNA

Sequence

ucuacaaauucuuugguuugauaugaaggaaagaUAUGAUCAUCAGAAAACAGUGauuuuguuuaaagcucguuauauaugauuggauucauaugagaauucaaguauguaagcgaguauaacucagucuuguuuaaauuauuuucauauugaaauuauguggagagaaaaucauaugcaaauaaguuagaaaaucauggauccacauaauuccaauuugaaagugaugagcucuauucaguuauagacuugaagucuuguaaucucuuaugaaucuaaucauagcgagcuuuagguaauaucacaguuuucuaugaucauaccuuuacuuuaaaucauuccaaaguauuugugga
(((((((((.((((((..((((.(((((..(((.(((((((((.(((((((.(((((.(((((((((((((((....((((((((((((((((.((((...((((....((((....(((((((.(((...((((..((((((((((.((((.(((((((((((.............((......))..............))))))))))).)))).))))))))))))))...))).)))))))..))))....))))...)))).))))))))))))))))))))))))))))))).))))).)))))))))))))))).)))..))))).))))..)))))).)))))))))

Structure

         u      uu    a     ga   a         C       A     u               uaua                u    auu    uaug    cgag       c   cuu    aa          u    a           -gagaaaaucauau  aa 
ucuacaaau cuuugg  ugau ugaag  aag UAUGAUCAU AGAAAAC GUGau uuguuuaaagcucgu    uaugauuggauucaua gaga   caag    uaag    uauaacu agu   guuu  auuauuuuca auug aauuaugugga              gc  a
||||||||| ||||||  |||| |||||  ||| ||||||||| ||||||| ||||| |||||||||||||||    |||||||||||||||| ||||   ||||    ||||    ||||||| |||   ||||  |||||||||| |||| |||||||||||              ||   
agguguuua gaaacc  acua auuuc  uuc auacuagua ucuuuug cacua aauggauuucgagcg    auacuaaucuaaguau cucu   guuc    guuc    auauuga uua   cgag  uagugaaagu uaac uuaauacaccu              ug  u
         u      uu    a     au   c         -       a     u               ----                u    aau    ugaa    --ag       c   ucu    --          u    c           agguacuaaaagau  aa 

Annotation confidence Not enough data

Genome context

chr3: 19544751-19545106 [+]

Mature ath-miR5633

• Accession: MIMAT0022393
• Description: Arabidopsis thaliana ath-miR5633 mature miRNA
• Sequence: 35 - UAUGAUCAUCAGAAAACAGUG - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176