miRBase entry: ath-MIR5636

Stem-loop ath-MIR5636


Accession
MI0019208
Description
Arabidopsis thaliana ath-MIR5636 precursor miRNA


Sequence

agauCGUAGUUGCAGAGCUUGACGGcgcucauguuuacucuuuuuguuaaaugacgucaggcuuagccgcuuagguuu
.((((..(((.((.((((((((((....((((....((.......))...)))))))))))))).)).)))..)))).

Structure
a    GU   U  A          Gcgc    guuu  uc 
 gauC  AGU GC GAGCUUGACG    ucau    ac  u
 ||||  ||| || ||||||||||    ||||    ||  u
 uugg  ucg cg uucggacugc    agua    ug  u
u    au   c  a          ----    -aau  uu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 18549959-18550036 [+]

Database links

Mature ath-miR5636

Accession MIMAT0022396
Description Arabidopsis thaliana ath-miR5636 mature miRNA
Sequence 5 - CGUAGUUGCAGAGCUUGACGG - 25
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176