Stem-loop ath-MIR5638a

Accession

MI0019210

Description

Arabidopsis thaliana ath-MIR5638a precursor miRNA

Gene family

MIPF0001350; MIR5638

Literature search

1 open access papers mention ath-MIR5638a
(1 sentences)

Sequence

ucuuuggaugcgagaauguguuuggggacaauuggagcaaauugacucccuuacgguuaguaugaagguuugaaagugaaagauuuuugguacguuucuagaaaguaaauaaaugaauccaaguuucaagcacauugucuuuacacuaguguggcaggcuggcagccuaccagauaaccauuuugauuguucauaaaguguuaccuucauauuuugcaaaaccucuuauccaauugcgagugcaaaguagaguuggaacauuccauuuaacaaucauaauggucaucuggugggcucuagaauucaucauuaugcacaccaaaguaaagauugugugcucgaaacuuggauucaauuacuuuuucgucaaaacAUACCAAAACUCUCUCACUUUuaaaaguucaaguuaacggaaguaaggggaucgaucuguuccaauuguacucaaacacacucucucauccaa
...(((((((.((((.((((((((((.((((((((((((.(((((.((((((((.(((((..((((..(((((((((((.(((.((((((((.(((((.(((((((((.....((((((((((((((.(((((((.((((((((....(((((.((..((((.((((((((((((.((((((.((((((((.....((((((.((..(.(((((((((....(((.((......)).))))))))))))..)..))))))))......)))))))).)))))).))))))))))))))))............)))))))....)))))))).))))))).)))))))))))))).))))))))).)...)))).)))))))).))).)))))))))))..))))..)))))....)))))))).))))).)))))))))))).)))))))))).)))).)))))))

Structure

ucu       c    a          g            a     c        ---g     ua    gg           a   u        c    --- u         auaaa              a       u        acua     g  ----------gg    c            a      u        -cauaa      a  uu -a         aaac   u  uc 
   uuggaug gaga uguguuuggg acaauuggagca auuga ucccuuac    guuag  ugaa  uuugaaaguga aga uuuuggua guuu   c agaaaguaa     ugaauccaaguuuc agcacau gucuuuac    gugug ca            cugg agccuaccagau accauu ugauuguu      aguguu cc  c  uauuuugca    cuc ua  c
   ||||||| |||| |||||||||| |||||||||||| ||||| ||||||||    |||||  ||||  ||||||||||| ||| |||||||| ||||   | |||||||||     |||||||||||||| ||||||| ||||||||    ||||| ||            |||| |||||||||||| |||||| ||||||||      |||||| ||  |  |||||||||    ||| ||   
   aaccuac cucu acacaaacuc uguuaaccuugu uagcu ggggaaug    caauu  acuu  aaauUUUCACU UCU AAAACCAU caaa   g uuuuucauu     acuuagguucaaag ucgugug uagaaaug    cacac gu            gauc ucggguggucua ugguaa acuaacaa      uuacaa gg  g  augaaacgu    gag gu  a
---       u    c          a            c     a        aagg     ga    ga           C   C        A    acu c         ----a              c       u        aaac     -  auuacuacuuaa    -            c      u        uuuacc      -  uu ag         ----   c  ua 

Annotation confidence Not enough data

Genome context

chr3: 15336705-15337170 [-]

Mature ath-miR5638a

• Accession: MIMAT0022398
• Description: Arabidopsis thaliana ath-miR5638a mature miRNA
• Sequence: 374 - AUACCAAAACUCUCUCACUUU - 394
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176