miRBase entry: ath-MIR5643a

Stem-loop ath-MIR5643a


Accession
MI0019216
Description
Arabidopsis thaliana ath-MIR5643a precursor miRNA
Gene family
MIPF0001348; MIR5643


Sequence

guguagccguaauccguaugagucuuugucuuuguaucuucuaacaaggauacaauauuuAGGCUUUUAAGAUCUGGUUGCga
.((((((((..(((.....((((((......(((((((((......))))))))).....))))))....))).)))))))).

Structure
g        ua   cguau      uugucu         cu 
 uguagccg  auc     gagucu      uuguaucuu  a
 ||||||||  |||     ||||||      |||||||||   
 gCGUUGGU  UAG     UUCGGA      aacauagga  a
a        -C   -AAUU      -uuuau         ac 


Annotation confidence Not enough data
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Genome context
chr5: 11667797-11667879 [+]

Database links

Mature ath-miR5643a

Accession MIMAT0022404
Description Arabidopsis thaliana ath-miR5643a mature miRNA
Sequence 61 - AGGCUUUUAAGAUCUGGUUGC - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176