miRBase entry: ath-MIR5635d

Stem-loop ath-MIR5635d


Accession
MI0019217
Description
Arabidopsis thaliana ath-MIR5635d precursor miRNA
Gene family
MIPF0001283; MIR5635

Literature search
1 open access papers mention ath-MIR5635d
(1 sentences)

Sequence

aguugacuucuaauuuaaccuauaaguuaucguugacacggccaaaucgacucaccauuaacacuucuuaacagcucuccuaacagcguaacuaacaacuguuuuuguccuuaaaccaacgauaacggcuguuaggccauguuuuguaacggcuguuaggagcgcUGUUAAGGAGUGUUAACGGUGagucuauuuggcugggucaacgauaaauuauauguuaaauuagaagucaaca
.((((((((((((((((((.(((((.(((((((((((.(((((((((.((((((((.((((((((((((((((((.(((((((((((....((((((.(((((.((((..........)))).))))).)))))).....(((....))).))))))))))).)))))))))))))))))).)))))))).))))))))).))))))))))).))))).)))))))))))))))))).

Structure
a                  c     g           a         c        a                  u           ------------guaa      a     u    ccuu 
 guugacuucuaauuuaac uauaa uuaucguugac cggccaaau gacucacc uuaacacuucuuaacagc cuccuaacagc                cuaaca cuguu uugu    a
 |||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||| |||||||||||||||||| |||||||||||                |||||| ||||| ||||     
 caacugaagauuaaauug auauu aauagcaacug gucgguuua cugaGUGG AAUUGUGAGGAAUUGUcg gaggauugucg                gauugu ggcaa agca    a
a                  u     a           g         u        C                  c           gcaauguuuuguaccg      c     u    acca 


Annotation confidence Not enough data
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Genome context
chr4: 1023912-1024149 [+]

Database links

Mature ath-miR5635d

Accession MIMAT0022405
Description Arabidopsis thaliana ath-miR5635d mature miRNA
Sequence 166 - UGUUAAGGAGUGUUAACGGUG - 186
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176