Stem-loop ath-MIR5644

Accession

MI0019218

Description

Arabidopsis thaliana ath-MIR5644 precursor miRNA

Sequence

uaGUGGGUUGCGGAUAACGGUAgccgguaggcacagauccgauauccuaaaauuuggaauacauaaauuaggauccauuagauccgucaacaucugcaaguaauuauuuauauuacaugcggauccgacauccgcaacacuacga
..(((((((((((((..(((..(((....)))((.((((.((((((((((....((.....))....)))))))..))).)))).))....(((((((.(((((.......))))).))))))))))..))))))))).))))..

Structure

ua    -         AA   -------------------------UAgccgguaggc  a    c   --       aauu  g 
  GUGG GUUGCGGAU  CGG                                     ac gauc gau  auccuaa    ug a
  |||| |||||||||  |||                                     || |||| |||  |||||||    || a
  cauc caacgccua  gcc                                     ug cuag uua  uaggauu    ac u
ag    a         ca   uaggcguacauuauauuuauuaaugaacgucuacaac  c    a   cc       aaau  a 

Annotation confidence Not enough data

Genome context

chr5: 16649994-16650138 [+]

Mature ath-miR5644

• Accession: MIMAT0022406
• Description: Arabidopsis thaliana ath-miR5644 mature miRNA
• Sequence: 3 - GUGGGUUGCGGAUAACGGUA - 22
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176