miRBase entry: ath-MIR5647

Stem-loop ath-MIR5647


Accession
MI0019223
Description
Arabidopsis thaliana ath-MIR5647 precursor miRNA


Sequence

auuaaauccucaagaaccauacagcuugauaugagagucuucaaaccugagucgccaacaaacuuaacccccuuuaaauauauacaaaagguaaagaaaccaauuuugauuucggaugauaaaagacaacacaauggagauuuaaauccaccaaagucgcacaaaaauagaacaagauaggcaucuuaacucucuaacguuuuuuagagucuuuggaaccuuaguuaugaugccuuucucgcucuauacauguucgaauuuggugaauuugacucucuaauguguuguauuugauaauccaaauucaaaaucgguuucuauaccuugugucaaugcuauguauuuagagaaggUCAAGUUUGAUGACGAUUCCAuuuuggagacucucuaauuaaguuguccuauucuugaggauuuaac
.(((((((((((((((....((((((((((..(((((((((((((...((((((.((.(((((((.(((..(((((((((((((((.((((((.(((((((.(((((((.((.((((....(((.((((((((.((((((.((((((.(((((((.(((.(((...(((((.(.(((.(((((((.(((((((((((......)))))).............))))).))))))).))).).)))))...))).))).))))))).)))))).)))))).)))))))).)))....)))).)).))))))).))))))).)))))).))).......))))))))))))..))).))))))).)).))))))...)))))))))))))..))))))))))....))))))))))))))).

Structure
a               ccau          au             ccu      c  a       a   cc            -------   a      a       a       u  c    gaua   g        a      u      c       g   c   aaa     a a   u       u     -------------      cg 
 uuaaauccucaagaa    acagcuugau  gagagucuucaaa   gagucg ca caaacuu acc  cuuuaaauauau       aca aaggua agaaacc auuuuga uu ggau    aaa acaacaca uggaga uuaaau caccaaa ucg aca   auaga c aga aggcauc uaacu             cucuaa  u
 |||||||||||||||    ||||||||||  |||||||||||||   |||||| || ||||||| |||  ||||||||||||       ||| |||||| ||||||| ||||||| || ||||    ||| |||||||| |||||| |||||| ||||||| ||| |||   ||||| | ||| ||||||| |||||             ||||||   
 aauuuaggaguucuu    uguugaauua  cucucagagguuu   CUUAGC GU GUUUGAA Ugg  gagauuuaugua       ugu uuccau ucuuugg uaaaacu aa ccua    uuu uguugugu aucucu aguuua gugguuu agc ugu   uaucu g ucu uccguag auuga             gagauu  u
c               aucc          au             uAC      A  A       C   aa            ucguaac   g      a       c       u  a    auag   a        a      c      a       a   u   aca     c c   u       u     uuccaagguuucu      uu 


Annotation confidence Not enough data
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Genome context
chr1: 22084264-22084683 [-]

Database links

Mature ath-miR5647

Accession MIMAT0022411
Description Arabidopsis thaliana ath-miR5647 mature miRNA
Sequence 354 - UCAAGUUUGAUGACGAUUCCA - 374
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176