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miRBase |
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Stem-loop sequence ath-MIR5648 |
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Accession | MI0019224 (change log) | ||||
Description | Arabidopsis thaliana miR5648 stem-loop | ||||
Stem-loop |
cuuca c cu guuau uc g a -ua g aa ---- a u u g cu a c --au c c a uu auu ----u uuu a 5' ucaucacuagacucauguuuu uaaccuuu cauucc gaa auag uugaaag ugg ugaucugua ggucucuuggcauu aacauug auuaaa ggugu ugcc cuauuu cuucagauugu uuuuaauguuuggaa uauuuggcuugacu ugu gaaaaaaaagu aaguuucaau aagugaau ua ggaa uauagcuuccaagu uc uuaaag u ||||||||||||||||||||| |||||||| |||||| ||| |||| ||||||| ||| ||||||||| |||||||||||||| ||||||| |||||| ||||| |||| |||||| ||||||||||| ||||||||||||||| |||||||||||||| ||| ||||||||||| |||||||||| |||||||| || |||| |||||||||||||| || |||||| 3' aguagugaucugaguacagaa auuggaaa guaagg uuu uauc aacuuuc acc auuagacgu ccagagaacuguaa uuguaac ugauuu ccgca acgg gauaaa gaagucuaaca gaaguuacaaaccuu auaaaccgaacuga aca cuuuuuuuuua uucaaaguua uucacuua au ccuu auaucgaagguuua ag aauuuu g ----- a au aauuu uu g a uag a aa cgau c u c a ac - a aaac a a - cu -au uauau -cu g |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Database links |
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Mature sequence ath-miR5648-5p |
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Accession | MIMAT0022412 |
Sequence |
151 - uuuggaaauauuuggcuugacu - 172 |
Evidence | experimental; Illumina [1] |
Mature sequence ath-miR5648-3p |
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Accession | MIMAT0022413 |
Sequence |
364 - aucugaagaaaauagcggcau - 384 |
Evidence | experimental; Illumina [1] |
References |
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1 |
PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"
Genome Res. 22:163-176(2012).
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