Stem-loop ath-MIR5648

Accession

MI0019224

Description

Arabidopsis thaliana ath-MIR5648 precursor miRNA

Sequence

cuucaucaucacuagacucauguuuucuaaccuuucucauuccguuaugaaucauagguugaaagaugguaugaucuguagggucucuuggcauuaaaacauugauuaaaagguguuugccucuauuugcuucagauugucuuuuuaaugUUUGGAAAUAUUUGGCUUGACUcuguaugaaaaaaaagucaaguuucaaucaagugaauauauuggaaauuuauagcuuccaaguuucuuuuuaaagaugguuuuaaucgauauauauuuggaagcuauauauuccucuaauucacuuaauugaaacuuaauuuuuuuuuccaaaacaaagucaagccaaauauuccaaacauugaagcaacaAUCUGAAGAAAAUAGCGGCAUacgcccuuuaguuagccaauguuaaaaugucaagagaccaugcagauuagauccaacuuucaagcuauuuuuuuuuaaggaauguaaaagguuaaaagacaugagucuagugauga
.....(((((((((((((((((((((.((((((((..((((((.....(((..((((.(((((((.(((..(((((((((.((((((((((((((..(((((((((((((.(((((.((((.((((((.(((((((((((..(((((((((((((((.((((((((((((((.(((..(((((((((((.((((((((((.((((((((.((..((((...((((((((((((((......((((((....)))))).........))))))))))))))..))))..)))))))))).)))))))))).)))))))))))....))).)))))))))))))))))))))))))))))..))))))))))).)))))).)))).))))).))))))....)))))))..)))))))))))))).)))))))))...))).))))))).))))..))).....))))))..)))))))).)))))))))))))))))))))

Structure

cuuca                     c        cu      guuau   uc    g       a   -ua         g              aa       ----      a     u    u      g           cu               A              c   --au           c          c        a  uu    auu              ---uucuuu      a 
     ucaucacuagacucauguuuu uaaccuuu  cauucc     gaa  auag uugaaag ugg   ugaucugua ggucucuuggcauu  aacauug    auuaaa ggugu ugcc cuauuu cuucagauugu  uuuuaaugUUUGGAA UAUUUGGCUUGACU ugu    gaaaaaaaagu aaguuucaau aagugaau ua  ggaa   uauagcuuccaagu         uuaaag u
     ||||||||||||||||||||| ||||||||  ||||||     |||  |||| ||||||| |||   ||||||||| ||||||||||||||  |||||||    |||||| ||||| |||| |||||| |||||||||||  ||||||||||||||| |||||||||||||| |||    ||||||||||| |||||||||| |||||||| ||  ||||   ||||||||||||||         ||||||  
     aguagugaucugaguacagaa auuggaaa  guaagg     uuu  uauc aacuuuc acc   auuagacgu ccagagaacuguaa  uuguaac    ugauuu ccgca ACGG GAUAAA GAAGUCUAaca  gaaguuacaaaccuu auaaaccgaacuga aca    cuuuuuuuuua uucaaaguua uucacuua au  ccuu   auaucgaagguuua         aauuuu g
-----                     a        au      aauuu   uu    g       a   uag         a              aa       cgau      c     U    C      A           ac               -              a   aaac           a          a        -  cu    -au              uauauagcu      g 

Annotation confidence Not enough data

Genome context

chr1: 11499384-11499883 [+]

Mature ath-miR5648-5p

• Accession: MIMAT0022412
• Description: Arabidopsis thaliana ath-miR5648-5p mature miRNA
• Sequence: 151 - UUUGGAAAUAUUUGGCUUGACU - 172
• Evidence: experimental ; Illumina [1]

Mature ath-miR5648-3p

• Accession: MIMAT0022413
• Description: Arabidopsis thaliana ath-miR5648-3p mature miRNA
• Sequence: 364 - AUCUGAAGAAAAUAGCGGCAU - 384
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176