Stem-loop ath-MIR5649a

Accession

MI0019226

Description

Arabidopsis thaliana ath-MIR5649a precursor miRNA

Gene family

MIPF0001369; MIR5649

Sequence

uucauauuauaguaaccaacauauucaauacuuucaaaugaagaaaaauaauuggcaucuucauuugaaaguAUUGAAUAUGUUGGUUACUAUaauaugaa
.(((((((((((((((((((((((((((((((((((((((((((.............))))))))))))))))))))))))))))))))))))))))))).

Structure

u                                           aaaau 
 ucauauuauaguaaccaacauauucaauacuuucaaaugaaga     a
 |||||||||||||||||||||||||||||||||||||||||||     a
 aguauaaUAUCAUUGGUUGUAUAAGUUAugaaaguuuacuucu     u
a                                           acggu 

Annotation confidence Not enough data

Genome context

chr1: 21360151-21360251 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR5649a

Mature ath-miR5649a

• Accession: MIMAT0022415
• Description: Arabidopsis thaliana ath-miR5649a mature miRNA
• Sequence: 73 - AUUGAAUAUGUUGGUUACUAU - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176