miRBase entry: ath-MIR833b

Stem-loop ath-MIR833b


Accession
MI0019230
Description
Arabidopsis thaliana ath-MIR833b precursor miRNA

Literature search
2 open access papers mention ath-MIR833b
(3 sentences)

Sequence

cuUGUUUGUUGACAUCGGUCUAGcucaaaccauacauauuugcaaagauguuuugguuugaacuagaccgaguacaacaaacaaa
.((((((((((((.(((((((((.((((((((...((((((....))))))..)))))))).))))))))))).)))))))))).

Structure
c          -  A         c        uac      g 
 uUGUUUGUUG AC UCGGUCUAG ucaaacca   auauuu c
 |||||||||| || ||||||||| ||||||||   ||||||  
 aacaaacaac ug agccagauc aguuuggu   uguaga a
a          a  -         a        -uu      a 


Annotation confidence Not enough data
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Genome context
chr1: 29525202-29525286 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR833b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR833b

Accession MIMAT0022419
Description Arabidopsis thaliana ath-miR833b mature miRNA
Sequence 3 - UGUUUGUUGACAUCGGUCUAG - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176