Stem-loop sequence ath-MIR5654

Accession

MI0019237 (change log)

Description

Arabidopsis thaliana miR5654 stem-loop

Literature search

1 open access papers mention ath-MIR5654
(3 sentences)

Stem-loop

                --         cc   c    cu gaa 
5' aaauaaaucccaa  caucuucca  uua cggc  u   c
   |||||||||||||  |||||||||  ||| ||||  |    
3' uuuauuuaggguu  guagaaggu  aau gucg  a   a
                uc         aa   u    au guu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr1: 11786292-11786371 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ath-MIR5654

• ath-MIR400: chr1: 11785936-11786037 [+]
• ath-MIR5654: chr1: 11786292-11786371 [+]

Database links

• RNAcentral:URS00007BA1E4_3702
• miRBase Tracker:MI0019237

Mature sequence ath-miR5654-5p

• Accession: MIMAT0022426
• Previous IDs: ath-miR5654
• Sequence: 3 - auaaaucccaacaucuucca - 22
• Evidence: experimental; Illumina [1]

Mature sequence ath-miR5654-3p

• Accession: MIMAT0023005
• Sequence: 57 - uggaagaugcuuugggauuuauu - 79
• Evidence: experimental; Illumina [2]

References

1. PMID:21940835 "High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis" Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN Genome Res. 22:163-176(2012).
2. PMID:22221297 "Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology" Zhang B, Xie D, Jin Z J Integr Plant Biol. 54:73-86(2012).