miRBase entry: ath-MIR5656

Stem-loop ath-MIR5656


Accession
MI0019240
Description
Arabidopsis thaliana ath-MIR5656 precursor miRNA


Sequence

aucuuucuugacaaaucauaacaacuuugguuaaaagguuucgaaaacucaaccucuucuucagucucucucuuuccaaaagggaaagACUGAAGUAGAGAUUGGGUUUccgauaccuuuuggcccaugucguuaugauuugucgaggaaggu
((((((((((((((((((((((.((...(((((((((((.(((.((((((((.((((.(((((((((.(((((((...))))))).))))))))).)))).)))))))).))).)))))))))))...)).))))))))))))))))))))))

Structure
                      a  uuu           u   a        c    u         c       c 
aucuuucuugacaaaucauaac ac   gguuaaaaggu ucg aaacucaa cucu cuucagucu ucucuuu  
|||||||||||||||||||||| ||   ||||||||||| ||| |||||||| |||| ||||||||| ||||||| c
uggaaggagcuguuuaguauug ug   ccgguuuucca agc UUUGGGUU GAGA GAAGUCAga agggaaa  
                      c  uac           u   c        A    U         a       a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 1727263-1727415 [+]

Database links

Mature ath-miR5656

Accession MIMAT0022429
Description Arabidopsis thaliana ath-miR5656 mature miRNA
Sequence 89 - ACUGAAGUAGAGAUUGGGUUU - 109
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176