Stem-loop sequence ath-MIR5660

Accession

MI0019245 (change log)

Description

Arabidopsis thaliana miR5660 stem-loop

Stem-loop

   uuu                          a   ---caa   ca   c            g         a           c   ccguau      -  ca 
5'    gacauaauaguuuucugguaacuuuc gac      ggc  aac gaauugucaggu guuagugca uggaaagcugg aaa      gaguau ac  u
      |||||||||||||||||||||||||| |||      |||  ||| |||||||||||| ||||||||| ||||||||||| |||      |||||| ||   
3'    uuguauuaucaaaaggccauugaaag cug      ccg  uug cuuaacagucua caaucacgu accuuucgacc uuu      cucaug ug  c
   ---                          g   uuuuug   ac   c            g         a           a   ------      a  uu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr4: 5292626-5292820 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0019245

Mature sequence ath-miR5660

• Accession: MIMAT0022434
• Sequence: 53 - caggugguuagugcaauggaa - 73
• Evidence: experimental; Illumina [1]

References

1. PMID:21940835 "High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis" Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN Genome Res. 22:163-176(2012).