Stem-loop sequence ath-MIR5662

Accession

MI0019250 (change log)

Description

Arabidopsis thaliana miR5662 stem-loop

Stem-loop

             a  g         u   c        a        a          a       a     a                             uau             a    aauauuuacuuuuu       u 
5' cauuuuuaau gu aucuuuaua uuu cucuauuu uagaggug cucuauuuua aggcauu uguuc aauggucaccucuaaaauagaguuuucuc   aauagaggaagaa uaga              gucucua a
   |||||||||| || ||||||||| ||| |||||||| |||||||| |||||||||| ||||||| ||||| |||||||||||||||||||||||||||||   ||||||||||||| ||||              |||||||  
3' guagagguua ca uggagauau aaa gagauaaa aucuccac gagauaaaau uucguaa acgag uuaccaguggagauuuuaucucaaaggag   uuaucuucuuuuu aucu              uagagau a
             c  g         u   a        -        g          c       c     g                             uuu             a    cuacuuaacaucuc       a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr2: 16798584-16798870 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS00007A7141_3702
• miRBase Tracker:MI0019250

Mature sequence ath-miR5662

• Accession: MIMAT0022439
• Sequence: 268 - agaggugaccauuggagaug - 287
• Evidence: experimental; Illumina [1]

References

1. PMID:21940835 "High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis" Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN Genome Res. 22:163-176(2012).