Stem-loop ath-MIR5645f

Accession

MI0019252

Description

Arabidopsis thaliana ath-MIR5645f precursor miRNA

Gene family

MIPF0001280; MIR5645

Sequence

cggaagacaaauaaaucguauaguuuuuguuguuuuucaaaauaaaugacaaaguuuuuguugaguugucAUUUGAGUCAUGUCGUUAAGuagguuaacagaauuuuuuuacggcguuaaugucucguuuaucuccuauguuagaacaaaacaacguucuucauugcagcucguuuugucuguugaaacaaauuuaaacccuaaaucccuaaaucgauuucauuaucugcgauuuugaggucaaugugggucucugauuuugagauaaugaaaucaauuugggaaauuaggguuuauauuuguuucaaaagacaaaacaacgucguuucgucucugcaauaaacgacguuguuuuguucuaacaaaguaaauaaacaagacauuaacgccguaaaaaaauuuuuuaacuuauuuaaugauaucucaaauggcaagucaacaaaaacuugucauuuauuucgaaagucaacaaaaacuugucgauuuauuugucuucugu
((((((((((((((((((...(((((((((((.(((((.(((((((((((((.(((((((((((.((((((((((((..(((((((((((((((((((.((((((((((((((((((((((((((.((((((...((.((((((((((((((((((((.((.(((((((...(((((((((.(((((((((((.((((((((((...(((((((.(((((((((((((.(((..((((((((......)))))).))..)))))))))))))))).)))))))...)))))))))).))))))))))).))))))))).(((......)))..))))))).)).)))))))))))))))))))).))...)))))).))))))))))))))))))))))))))))))))))))))))))))))))))))))))).)))))))))))))))))))))))).))))).)))))))))))...)))))))))))))))))).

Structure

-                  uau           u     a             a           g            UC                   c                          c      cuc  a                    c  c       ------------cuc         g           u          auc       c             g   uu  -      aa 
 cggaagacaaauaaaucg   aguuuuuguug uuuuc aaauaaaugacaa guuuuuguuga uugucAUUUGAG  AUGUCGUUAAGuagguuaa agaauuuuuuuacggcguuaaugucu guuuau   cu uguuagaacaaaacaacguu uu auugcag               guuuugucu uugaaacaaau uaaacccuaa   ccuaaau gauuucauuaucu cga  uu gagguc  u
 ||||||||||||||||||   ||||||||||| ||||| ||||||||||||| ||||||||||| ||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||| ||||||   || |||||||||||||||||||| || |||||||               ||||||||| ||||||||||| ||||||||||   ||||||| ||||||||||||| |||  || ||||||   
 gucuucuguuuauuuagc   ucaaaaacaac gaaag uuuauuuacuguu caaaaacaacu aacgguaaacuc  uauaguaauuuauucaauu uuuuaaaaaaaugccgcaauuacaga caaaua   ga acaaucuuguuuuguugcag aa uaacguc               caaaacaga aacuuuguuua auuugggauu   ggguuua cuaaaguaauaga guu  ag cucugg  g
u                  ugu           u     c             -           g            --                   -                          a      aau  a                    c  a       ucugcuuugcugcaa         a           u          aaa       a             -   uu  u      gu 

Annotation confidence Not enough data

Genome context

chr5: 14946671-14947169 [-]

Mature ath-miR5645f

• Accession: MIMAT0022441
• Description: Arabidopsis thaliana ath-miR5645f mature miRNA
• Sequence: 71 - AUUUGAGUCAUGUCGUUAAG - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176