Stem-loop sequence ath-MIR5664

Accession

MI0019253 (change log)

Description

Arabidopsis thaliana miR5664 stem-loop

Stem-loop

   u              a         a                               ugca         g  ac   ca    ---a       ----g   auu   a 
5'  ugucgucuaugaug auauaguca uuuuaucggucugcaauaggcaaauaaaaca    auuacuuug uc  gga  aauu    uuuuuau     gcu   gag c
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    ||||||||| ||  |||  ||||    |||||||     |||   ||| c
3'  acagcagauacuau uauaucagu aaaauagccagauguuauccguuuauuuugu    uaaugaaac ag  ccu  uuag    aaaaaua     uga   uuc a
   u              a         g                               cuac         a  ca   -a    caua       aauaa   -au   u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr1: 17386795-17387008 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0019253

Mature sequence ath-miR5664

• Accession: MIMAT0022442
• Sequence: 19 - auagucaauuuuaucggucug - 39
• Evidence: experimental; Illumina [1]

References

1. PMID:21940835 "High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis" Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN Genome Res. 22:163-176(2012).