Stem-loop ath-MIR5665

Accession

MI0019254

Description

Arabidopsis thaliana ath-MIR5665 precursor miRNA

Sequence

cuuguuuucgauuucaucauuuuucucuauuauuaugaauuccacaucuugucuaccaauuguuuucauuuaaagauuuugauucuuauuuagauuuuucacaaucuauuuugguucacagauuaguuaagcauuauugucuucaccuacacguuuauaauugcauauaauuuuauuuaaauaauauguuauaucagagacaaguucauaucgaaugaguaauaaaaucagaucaggaacaaauucagaucgaaugguagacaagauaauaugauauaacuugauuuuuugguuauuuugcaauagaaagaaaaaaaucaauaaaucgggucggagaagacaauaaugcucaacuaaucuguagaccaaaauagauggugaaaaaucuaaauaaaauucgaaacccuuaaaugaggacaaUUGGUGGACAAGAUCUGGGAUucaugauaauuuugaaagaugaugaaaucagagacaaa
.(((((((.((((((((((((((((...((((((((((((((((.((((((((((((((((((((((((((((.(.((((((...(((((((((((((((((.(((((((((((((.(((((((((((.(((((((((((((((.((...............((((((.((((.....)))).))))))(((((((...((..((((.....))))..))......((((((((..(((....))).))))...)))).............)))))))(((((((((.((((((.((((...........)))).)))))).))))))))).)).))))))))))))))).))))))))))).))))))))))))).)))))))))))))))))...)))))).).)))))))))))))))))))))))))))).))))))))))))))))...)))))))))))))))).))))))).

Structure

c       c                ucu                c                            a a      uuc                 a             c           a               a  uacacguuuauaauugcauauaauuuuauuuaaauaauauguuauaucagagacaaguucauaucgaaugaguaauaaaaucagaucaggaacaaauucagaucgaaugguagacaagauaauaugauaua         u      a    gcaa 
 uuguuuu gauuucaucauuuuuc   auuauuaugaauucca aucuugucuaccaauuguuuucauuuaa g uuuuga   uuauuuagauuuuucac aucuauuuugguu acagauuaguu agcauuauugucuuc cc                                                                                                                                   acuugauuu uugguu uuuu    u
 ||||||| ||||||||||||||||   |||||||||||||||| |||||||||||||||||||||||||||| | ||||||   ||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||| ||                                                                                                                                   ||||||||| |||||| ||||    a
 aacagag cuaaaguaguagaaag   uaauaguacuUAGGGU UAGAACAGGUGGUUaacaggaguaaauu c aaagcu   aauaaaucuaaaaagug uagauaaaaccag ugucuaaucaa ucguaauaacagaag gg                                                                                                                                   ugggcuaaa aacuaa aaaa    g
a       a                uuu                C                            c c      uaa                 g             a           c               a  ----------------------------------------------------------------------------------------------------------------------------------c         u      a    gaaa 

Annotation confidence Not enough data

Genome context

chr5: 19499055-19499533 [-]

Mature ath-miR5665

• Accession: MIMAT0022443
• Description: Arabidopsis thaliana ath-miR5665 mature miRNA
• Sequence: 421 - UUGGUGGACAAGAUCUGGGAU - 441
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176