Stem-loop sequence gma-MIR2111a

Accession

MI0019269 (change log)

Previous IDs

gma-MIR2111

Description

Glycine max miR2111 stem-loop

Gene family

MIPF0000754; MIR2111

Literature search

5 open access papers mention gma-MIR2111a
(28 sentences)

Stem-loop

   ---au      gucc   uu g             ug   u      -   uauc 
5'      ugcugg    gga  a guaaucugcaucc  agg uuagga caa    c
        ||||||    |||  | |||||||||||||  ||| |||||| |||    u
3'      acgacc    ccu  u cauuagacguagg  ucc gaucuu guu    u
   auguc      -guu   uc g             gu   u      u   uugu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr1: 33084345-33084452 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR2111a

• gma-MIR2111a: chr1: 33084345-33084452 [+]
• gma-MIR10197: chr1: 33086656-33086756 [+]

Database links

• miRBase Tracker:MI0019269

Mature sequence gma-miR2111a

• Accession: MIMAT0022457
• Previous IDs: gma-miR2111
• Sequence: 68 - guccuugggaugcagauuacg - 88
• Evidence: experimental; Illumina [1], RT-PCR [1]

References

1. PMID:21219599 "Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing" Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS BMC Plant Biol. 11:5(2011).