Stem-loop gma-MIR5678

Accession

MI0019278

Description

Glycine max gma-MIR5678 precursor miRNA

Sequence

gcaggacacgUUCCAUGAUAAGAUCUUUGACugcacaugguucuaaaauuucgguugguaauaagagugaugacaucguaauucuuuuuuggaugaggugacuacacaugauaagcauaucaccaauacagaauuucucuccagcacucaccucauccaaugaaaaaauacaaugucaucacuauuauuaucaacagcaauucuagaaucagucaaagaucuuaucauggaacauguccuac
..((((((.((((((((((((((((((((((((......((((((.((((.(.(((((((((((.(((((((((((.(((.((.(((.(((((((((((((.......(((((....))))).......(((.....))).......))))))))))))).))).)).))).))))))))))).))))))))))).).)))).)))))))))))))))))))))))))))))).))))))..

Structure

gc      c                        cacaug      a    u g           g           c   a  c   u             ------------------cuacaca     a 
  aggaca gUUCCAUGAUAAGAUCUUUGACug      guucua aauu c guugguaauaa agugaugacau gua uu uuu uuggaugagguga                         ugaua g
  |||||| ||||||||||||||||||||||||      |||||| |||| | ||||||||||| ||||||||||| ||| || ||| |||||||||||||                         |||||  
  uccugu caagguacuauucuagaaacugac      uaagau uuaa g caacuauuauu ucacuacugua cau aa aag aaccuacuccacu                         acuau c
ca      a                        ------      c    c a           a           a   a  a   u             cacgaccucucuuuaagacauaacc     a 

Annotation confidence Not enough data

Genome context

chr14: 6867862-6868103 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR5678

Mature gma-miR5678

• Accession: MIMAT0022466
• Description: Glycine max gma-miR5678 mature miRNA
• Sequence: 11 - UUCCAUGAUAAGAUCUUUGAC - 31
• Evidence: experimental ; Illumina [1-2], RT-PCR [1]

References

1. PubMed ID: 21219599
   Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
   Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS
   BMC Plant Biol (2011) 11:5


2. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153