miRBase entry: bra-MIR5711

Stem-loop bra-MIR5711


Accession
MI0019320
Description
Brassica rapa bra-MIR5711 precursor miRNA


Sequence

auugauuacauacucgguaaaagccuucaaaauaugaguuaauauuuugaguaccacuccccaaaagccacaacauaacucaUGUUUUGUGGGUUUCUACCGAguaug
........(((((((((((.((((((.((((((((((((((...(((((.(........).))))).........)))))))))))))).)))))).)))))))))))

Structure
auugauua           a      u              ------aua     a uac 
        cauacucggua aagccu caaaauaugaguua         uuuug g   c
        ||||||||||| |||||| ||||||||||||||         ||||| |    
        guaugAGCCAU UUUGGG GUUUUGUacucaau         aaaac c   a
--------           C      U              acaacaccg     c cuc 


Annotation confidence Not enough data
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Genome context
chrA4: 15753060-15753167 [-]

Database links

Mature bra-miR5711

Accession MIMAT0023006
Description Brassica rapa bra-miR5711 mature miRNA
Sequence 83 - UGUUUUGUGGGUUUCUACCGA - 103
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22025521
    Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa
    "Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y"
    "J Exp Bot (2012) 63:1025-1038