Stem-loop bra-MIR5654b

Accession

MI0019322

Description

Brassica rapa bra-MIR5654b precursor miRNA

Gene family

MIPF0001454; MIR5654

Literature search

2 open access papers mention bra-MIR5654b
(2 sentences)

Sequence

uaaugauguauuguagcucugcguuucuuguucguucacucuuuugucagguauuaacaagAUAAAUCCCAAGCAUCAUCCAccuuauuagcccuugaacaugaaggcuuguaaaauggaugaugcuugggauuuauuuuguacucuccucuucuaaaagaguguugccuccauaggacuaccaaugauuucaga
...(((.(((((((((.........((((((..((.((((((((((..(((.....((((((((((((((((((((((((((..((((.((((.((......)).)))).))))..)))))))))))))))))))))))))).....)))....))))))))))..))....))))))))).)))).)).)))..

Structure

uaa   u  -    -   cucugcguu      --uc  -u          --uc   uauua                          cc    u    c  ga 
   uga gu auug uag         ucuugu    gu  cacucuuuug    agg     acaagAUAAAUCCCAAGCAUCAUCCA  uuau agcc uu  a
   ||| || |||| |||         ||||||    ||  ||||||||||    |||     ||||||||||||||||||||||||||  |||| |||| ||   
   acu ua uaac auc         aggaua    cg  gugagaaaau    ucc     uguuuuauuuaggguucguaguaggu  aaug ucgg ag  c
-ag   u  g    c   ---------      ccuc  uu          cuuc   ucuca                          aa    u    a  ua 

Annotation confidence Not enough data

Genome context

Unknown

Mature bra-miR5654b

• Accession: MIMAT0023008
• Description: Brassica rapa bra-miR5654b mature miRNA
• Sequence: 62 - AUAAAUCCCAAGCAUCAUCCA - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22025521
   Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa
   "Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y"
   "J Exp Bot (2012) 63:1025-1038