Stem-loop bra-MIR5714

Accession

MI0019325

Description

Brassica rapa bra-MIR5714 precursor miRNA

Literature search

2 open access papers mention bra-MIR5714
(2 sentences)

Sequence

gguaugagcuuuaugugauucaguggugauucucgagaaugauuucaacuguuucuggaugcuguagagucuugucaucgagaacuugcuggcucuguuucuggauauucaaacuauuggugauagaaaaacaugcuaaagcuugcaaauccuagaugacaAGACUCUACGACAUCAAGAAACaguuaaaauucucgaugacaagacucuacaacaucaacaaagguucuggccaa
(((..(((((((.((((((...((((.(..((((((((((..(((.((((((((((.((((.(((((((((((((((((.((...((((.(((((((((((((.....((((....))))...))))..)))).)....)))).))))...)).))))))))))))))))).)))).))))))))))))))))))))).)).....).))))...))).))))))))))..)))..

Structure

--   au       a   -   uca    u ---au  -        ga   c          g    c                 g  aac    u    ---- -    --    gauau    a 
  ggu  gagcuuu ugu gau   gugg g     uc ucgagaau  uuu aacuguuucu gaug uguagagucuugucauc ag   uugc ggcu    c uguu  ucug     ucaa c
  |||  ||||||| ||| |||   |||| |     || ||||||||  ||| |||||||||| |||| ||||||||||||||||| ||   |||| ||||    | ||||  ||||     ||||  
  ccg  cuuggaa aca cua   cauc c     ag agcucuua  aaa uugaCAAAGA CUAC GCAUCUCAGAacaguag uc   aacg ucga    g acaa  agau     gguu u
aa   gu       -   a   caa    u agaac  u        --   -          A    A                 a  cua    u    aauc u    aa    --agu    a 

Annotation confidence Not enough data

Genome context

chrA6: 4279161-4279396 [-]

Mature bra-miR5714

• Accession: MIMAT0023011
• Description: Brassica rapa bra-miR5714 mature miRNA
• Sequence: 162 - AGACUCUACGACAUCAAGAAAC - 183
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22025521
   Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa
   "Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y"
   "J Exp Bot (2012) 63:1025-1038