miRBase entry: bra-MIR5721

Stem-loop bra-MIR5721


Accession
MI0019333
Description
Brassica rapa bra-MIR5721 precursor miRNA


Sequence

gggcaucuuuauccccacuccauaauuuacuccAAAAAUGGAGUGAGAAAUGGAguauggacaaaaaauaaaaaaucuuuauauuuauggaguaaucacuuuuuuguuucuucacuacuucauuuuccacuccauuuugcaguaaauuauggaguggagaugaaaaugcucuuaguaa
((((((.((((((.(((((((((((((((((.(((((.(((((((.((((((((((((((((((((((........((((((....)))))).......)))))))))....)).))))))))))).)))))))))))).))))))))))))))))).)))))).)))))).......

Structure
-------      c      c                 c     A       A           -  ----         uaaaaaau      a 
       gggcau uuuauc ccacuccauaauuuacu cAAAA UGGAGUG GAAAUGGAgua ug    gacaaaaaa        cuuuau u
       |||||| |||||| ||||||||||||||||| ||||| ||||||| ||||||||||| ||    |||||||||        ||||||  
       cucgua aaguag ggugagguauuaaauga guuuu accucac uuuuacuucau ac    uuguuuuuu        gaggua u
aaugauu      a      a                 c     -       c           c  uucu         -cacuaau      u 


Annotation confidence Not enough data
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Genome context
chrA2: 24366844-24367021 [-]

Database links

Mature bra-miR5721

Accession MIMAT0023019
Description Brassica rapa bra-miR5721 mature miRNA
Sequence 34 - AAAAAUGGAGUGAGAAAUGGA - 54
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22025521
    Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa
    "Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y"
    "J Exp Bot (2012) 63:1025-1038