Stem-loop bra-MIR5722

Accession

MI0019334

Description

Brassica rapa bra-MIR5722 precursor miRNA

Sequence

uuacagucaaucaaccaaucaucauuucuugauuaguaucUGAAAUAGAGUCAUGUGGAACGuuguuugggaaguccacaaguuucaacucauaucauugauucaagaaguggaugauugauugauugauugacuguguugucuacacaaucagcguuucacaugaaucucucuuucaaauauuaaucaagaaguggaugauugauugauugauug
...(((((((((((.((((((((((((((((((((((((.(((((.(((((((((((((((((((.(((.(.((.(.(((((((((((.(((.((((.(.(((((.....))))).).)))))))))))..)))).))).).)).).))).)))))))))))))))..)))).))))).)))))))))))))))).)))))))).)))))))))))

Structure

uua           c        -                c     U    --               u   g a  u c   -    --    c   u    u g     a 
   cagucaaucaa caaucauc auuucuugauuaguau UGAAA AGAG  UCAUGUGGAACGuug uug g ag c aca aguu  ucaa uca auca u auuca g
   ||||||||||| |||||||| |||||||||||||||| ||||| ||||  ||||||||||||||| ||| | || | ||| ||||  |||| ||| |||| | ||||| a
   guuaguuaguu guuaguag ugaagaacuaauuaua acuuu ucuc  aguacacuuugcgac aac c uc g ugu ucag  aguu agu uagu a uaggu a
---           a        g                a     c    ua               u   a a  u u   g    uu    -   -    u g     g 

Annotation confidence Not enough data

Genome context

chrA10: 11342742-11342957 [+]

Mature bra-miR5722

• Accession: MIMAT0023020
• Description: Brassica rapa bra-miR5722 mature miRNA
• Sequence: 41 - UGAAAUAGAGUCAUGUGGAACG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22025521
   Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa
   "Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y"
   "J Exp Bot (2012) 63:1025-1038