Stem-loop bra-MIR5724

Accession

MI0019337

Description

Brassica rapa bra-MIR5724 precursor miRNA

Literature search

4 open access papers mention bra-MIR5724
(4 sentences)

Sequence

cagauugucuacagaugcuacaacagugaggaguuugguuggagaugaugcauugacguuguugauagugcaaaaauauagagacaguAACCGCCGGUUUGAUAAUAGCcuuuagggugaauuggaugaacauauccaugcaucaccauaaacggugagacagcaagaaccacaagagcaagcucccaauucgccguaaaagcuauuauaaaaccggcgguuagagucgcuacauuuuuugcacuaucaacgccaacguauuuccuaccgaacuccuauguuauuucaucaaauaucaugugggcucuga
((((..(((((((((((..(.((((...(((((((((((.((((((.........(((((((((((((((((((((..(((.(((..(((((((((((((.((((((((.((((.((((((((((.............((..(((((......)))))..)).............(((....))))))))))))).)))).)))))))).)))))))))))))..))).)))...))))))))))))))))...))))))))))).))))))))))).)))).)..))))........))))))))))).

Structure

-    uu       --------    cu c    gug           u      gaugcauug     ---                -ua   a   ag             G        c    g          ----------augaacauaucca  ca     au 
 caga  gucuaca        gaug  a aaca   aggaguuuggu ggagau         acguu   guugauagugcaaaaa   uag gac  uAACCGCCGGUUU AUAAUAGC uuua ggugaauugg                       ug  ucacc  a
 ||||  |||||||        ||||  | ||||   ||||||||||| ||||||         |||||   ||||||||||||||||   ||| |||  ||||||||||||| |||||||| |||| ||||||||||                       ||  |||||   
 gucu  cgggugu        cuac  u uugu   uccucaagcca ccuuua         ugcaa   caacuaucacguuuuu   auc cug  auuggcggccaaa uauuaucg aaau ccgcuuaacc                       ac  agugg  a
a    --       acuauaaa    uu a    --a           u      ---------     ccg                uac   g   ag             a        a    g          cucgaacgagaacaccaagaacg  ag     ca 

Annotation confidence Not enough data

Genome context

chrA8: 13793832-13794141 [+]

Mature bra-miR5724

• Accession: MIMAT0023023
• Description: Brassica rapa bra-miR5724 mature miRNA
• Sequence: 89 - AACCGCCGGUUUGAUAAUAGC - 109
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22025521
   Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa
   "Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y"
   "J Exp Bot (2012) 63:1025-1038