Stem-loop bra-MIR5726

Accession

MI0019339

Description

Brassica rapa bra-MIR5726 precursor miRNA

Literature search

2 open access papers mention bra-MIR5726
(2 sentences)

Sequence

agaugaaggacacguaguaaaucaaaugccggcaccacuagaagacgacacguuuaaagaccuuauucaagcaaccuuugccuauaaauauguauucaugaucaaggaagggggcacgagcgauuucacucucuaaacuucuacucucuaaaacucucucuucucucuaugcgaggguuaugauaaggaugcucuccuuauucaagcaaucuagaaaaggaugcucgugcccccuuccuugaucaugaaugcguauuuauaggCAAAGGUUGCUUGAAUAAGGUcuuucaacgugucgucuucuaguggugccggcauuugauuuauuauuugaagagcauc
.((((.....((.(((((((((((((((((((((((((((((((((((((((((.(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((...((.((.((((................(((((((.(..........).)))))))..((((((((.....)))))))).........))))..))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))))))))))))))))))))))))))).)).....))))

Structure

a    aagga  c                                         u                                                                   auu  a  -c    ----------------aacuucuacucucuaa       u uucu 
 gaug     ca guaguaaaucaaaugccggcaccacuagaagacgacacguu aaagaccuuauucaagcaaccuuugccuauaaauauguauucaugaucaaggaagggggcacgagcg   uc cu  ucua                                aacucuc c    c
 ||||     || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || ||  ||||                                ||||||| |     
 cuac     gu uauuauuuaguuuacggccguggugaucuucugcugugcaa uuucUGGAAUAAGUUCGUUGGAAACggauauuuaugcguaaguacuaguuccuucccccgugcucgu   ag ga  agau                                uugggag g    u
-    gagaa  u                                         c                                                                   ---  -  aa    cuaacgaacuuauuccucucguaggaauagua       c uauc 

Annotation confidence Not enough data

Genome context

chrA1: 19127792-19128133 [-]

Mature bra-miR5726

• Accession: MIMAT0023025
• Description: Brassica rapa bra-miR5726 mature miRNA
• Sequence: 264 - CAAAGGUUGCUUGAAUAAGGU - 284
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22025521
   Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa
   "Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y"
   "J Exp Bot (2012) 63:1025-1038