Stem-loop ssl-MIR172

Accession

MI0019348

Description

Salvia sclarea ssl-MIR172 precursor miRNA

Gene family

MIPF0000035; MIR172

Sequence

guguagcaucaucaagauucacaugcaaaaaagcaugccauauauaugagcugagcccagcuuuggauggugAGAAUCUUGAUGAUGCUGCAU
((((((((((((((((((((.(((((......)))))((((......((((((....))))))...))))...))))))))))))))))))))

Structure

                    acaugcaaaaaagcaug    auauau      a 
guguagcaucaucaagauuc                 ccau      gagcug g
||||||||||||||||||||                 ||||      ||||||  
UACGUCGUAGUAGUUCUAAG                 ggua      uucgac c
                    --------------Agu    ---ggu      c 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssl-miR172

• Accession: MIMAT0022514
• Description: Salvia sclarea ssl-miR172 mature miRNA
• Sequence: 73 - AGAAUCUUGAUGAUGCUGCAU - 93
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19840835
   One-step identification of conserved miRNAs, their targets, potential transcription factors and effector genes of complete secondary metabolism pathways after 454 pyrosequencing of calyx cDNAs from the Labiate Salvia sclarea L
   "Legrand S, Valot N, Nicole F, Moja S, Baudino S, Jullien F, Magnard JL, Caissard JC, Legendre L"
   "Gene (2010) 450:55-62