Stem-loop ssl-MIR394

Accession

MI0019349

Description

Salvia sclarea ssl-MIR394 precursor miRNA

Gene family

MIPF0000100; MIR394

Sequence

UUGGCAUUCUGUCCACCUCCuuucaucggagagaauaccagaaucuaacaaaccagaaaccuuauuuuucacgaaaaaauaaaaagagaaaaaaaaacgugaaauuguuuuggcuuguuuaggaggugggcauacugccaa
.(((((...((((((((((((......((........)).......(((((.((((((........(((((((........................)))))))...)))))).))))).))))))))))))...))))).

Structure

U     UUC            uucaucggagagaauaccagaaucu     a      accuuauu       aaaaaauaaaa 
 UGGCA   UGUCCACCUCCu                         aacaa ccagaa        uuucacg           a
 |||||   ||||||||||||                         ||||| ||||||        |||||||            
 accgu   acggguggagga                         uuguu gguuuu        aaagugc           g
a     cau            ------------------------u     c      -----guu       aaaaaaaaaga 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssl-miR394

• Accession: MIMAT0022515
• Description: Salvia sclarea ssl-miR394 mature miRNA
• Sequence: 1 - UUGGCAUUCUGUCCACCUCC - 20
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19840835
   One-step identification of conserved miRNAs, their targets, potential transcription factors and effector genes of complete secondary metabolism pathways after 454 pyrosequencing of calyx cDNAs from the Labiate Salvia sclarea L
   "Legrand S, Valot N, Nicole F, Moja S, Baudino S, Jullien F, Magnard JL, Caissard JC, Legendre L"
   "Gene (2010) 450:55-62