Stem-loop ssl-MIR396

Accession

MI0019351

Description

Salvia sclarea ssl-MIR396 precursor miRNA

Gene family

MIPF0000047; MIR396

Sequence

UUCCACAGCUUUCUUGAACUGcgcggaacuguacgucgccgcaccggaggcgaugaugcaaucuuaugcgguucaauaaagcuguggga
((((((((((((.((((((((((.(((..(((((((((((........))))))).)))).)))..)))))))))).))))))))))))

Structure

            C          -c   ac    -       gca 
UUCCACAGCUUU UUGAACUGcg  gga  ugua cgucgcc   c
|||||||||||| ||||||||||  |||  |||| |||||||    
agggugucgaaa aacuuggcgu  ucu  acgu guagcgg   c
            u          au   -a    a       agg 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssl-miR396

• Accession: MIMAT0022517
• Description: Salvia sclarea ssl-miR396 mature miRNA
• Sequence: 1 - UUCCACAGCUUUCUUGAACUG - 21
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19840835
   One-step identification of conserved miRNAs, their targets, potential transcription factors and effector genes of complete secondary metabolism pathways after 454 pyrosequencing of calyx cDNAs from the Labiate Salvia sclarea L
   "Legrand S, Valot N, Nicole F, Moja S, Baudino S, Jullien F, Magnard JL, Caissard JC, Legendre L"
   "Gene (2010) 450:55-62