Stem-loop ssl-MIR397

Accession

MI0019352

Description

Salvia sclarea ssl-MIR397 precursor miRNA

Gene family

MIPF0000120; MIR397

Sequence

UCAUUGAGUGCAGCGUUGAUGacaucggcauucguccuuuuccuucgucuccgacugucguuucauugacgcugcacucaaua
..((((((((((((((((((((...(((((.(((.................))).)))))..)))))))))))))))))))).

Structure

UC                    cau     u   uccuuuu 
  AUUGAGUGCAGCGUUGAUGa   cggca ucg       c
  ||||||||||||||||||||   ||||| |||       c
  uaacucacgucgcaguuacu   gcugu agc       u
-a                    -uu     c   cucugcu 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssl-miR397

• Accession: MIMAT0022518
• Description: Salvia sclarea ssl-miR397 mature miRNA
• Sequence: 1 - UCAUUGAGUGCAGCGUUGAUG - 21
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19840835
   One-step identification of conserved miRNAs, their targets, potential transcription factors and effector genes of complete secondary metabolism pathways after 454 pyrosequencing of calyx cDNAs from the Labiate Salvia sclarea L
   "Legrand S, Valot N, Nicole F, Moja S, Baudino S, Jullien F, Magnard JL, Caissard JC, Legendre L"
   "Gene (2010) 450:55-62