Stem-loop ssl-MIR399

Accession

MI0019354

Description

Salvia sclarea ssl-MIR399 precursor miRNA

Gene family

MIPF0000015; MIR399

Sequence

uagggcacuuacuccuuuggcaguagcauaguaaauugugaauauuuuuuuuuuucuauuucacauagcucacUGCCAAAGGAGAAUUGCCCGG
..(((((.((.((((((((((((((((.........((((((.................))))))..))).))))))))))))))).)))))..

Structure

ua     c  a             -   auaguaaau      uauuuuu 
  gggca uu cuccuuuggcagu agc         ugugaa       u
  ||||| || ||||||||||||| |||         ||||||       u
  CCCGU AA GAGGAAACCGUca ucg         acacuu       u
GG     U  -             c   -------au      uaucuuu 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssl-miR399

• Accession: MIMAT0022520
• Description: Salvia sclarea ssl-miR399 mature miRNA
• Sequence: 74 - UGCCAAAGGAGAAUUGCCCGG - 94
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19840835
   One-step identification of conserved miRNAs, their targets, potential transcription factors and effector genes of complete secondary metabolism pathways after 454 pyrosequencing of calyx cDNAs from the Labiate Salvia sclarea L
   "Legrand S, Valot N, Nicole F, Moja S, Baudino S, Jullien F, Magnard JL, Caissard JC, Legendre L"
   "Gene (2010) 450:55-62