Stem-loop ssl-MIR828

Accession

MI0019355

Description

Salvia sclarea ssl-MIR828 precursor miRNA

Gene family

MIPF0000544; MIR828

Sequence

UCUUGCUCAAAUGAGUAUUCCAaagagaugcagaaugcuaugguuuguuaauccguagaauauucuuguguuucuguguaucaguuuggaagugcaucugcuucugagaugcucauuugggcaaag
..(((((((((((((((((.((.((((((((((((((((((((.........))))))..))))).))))))))).)).......((((((((......)))))))))))))))))))))))))..

Structure

UC                 ----------------------------C  a         -     --      uuu 
  UUGCUCAAAUGAGUAUU                             CA agagaugca gaaug  cuaugg   g
  |||||||||||||||||                             || ||||||||| |||||  ||||||   u
  aacggguuuacucguag                             gu ucuuugugu cuuau  gaugcc   u
ga                 agucuucgucuacgugaagguuugacuau  g         u     aa      uaa 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssl-miR828

• Accession: MIMAT0022521
• Description: Salvia sclarea ssl-miR828 mature miRNA
• Sequence: 1 - UCUUGCUCAAAUGAGUAUUCCA - 22
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19840835
   One-step identification of conserved miRNAs, their targets, potential transcription factors and effector genes of complete secondary metabolism pathways after 454 pyrosequencing of calyx cDNAs from the Labiate Salvia sclarea L
   "Legrand S, Valot N, Nicole F, Moja S, Baudino S, Jullien F, Magnard JL, Caissard JC, Legendre L"
   "Gene (2010) 450:55-62