Stem-loop ssl-MIR1078

Accession

MI0019357

Description

Salvia sclarea ssl-MIR1078 precursor miRNA

Sequence

CUUGAUUGAUUCAAUUGUGAUucuuggauaauuuugguuucuugguugauuagguuagaggauuuugaauaugguuggauucaaauugugauugaaucaauggcuucaugacuuuuuuaggugccuagagucauuuuuguaagagauguagauuauccaaugucguaaaucaaauaag
((((.((((((....((((((..(((((((((((..((((((((..((((((((((((((((((.((((..(.((((.((((((.......)))))))))).).)))).)).)))))))...)))))..))))......))))))))..))))))))))).)))))))))))).))))

Structure

    A      CAAU      uc           ug        ----gu    --     ---       -  u    ua g    g      au 
CUUG UUGAUU    UGUGAU  uuggauaauuu  guuucuug      ugau  uaggu   uagagga uu ugaa  u guug auucaa  u
|||| ||||||    ||||||  |||||||||||  ||||||||      ||||  |||||   ||||||| || ||||  | |||| ||||||  g
gaau aacuaa    augcug  aaccuauuaga  uagagaau      acug  auccg   auuuuuu ag acuu  g uaac uaaguu  u
    a      ----      -u           ug        guuuuu    ag     ugg       c  u    -c g    -      ag 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssl-miR1078

• Accession: MIMAT0022523
• Description: Salvia sclarea ssl-miR1078 mature miRNA
• Sequence: 1 - CUUGAUUGAUUCAAUUGUGAU - 21
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19840835
   One-step identification of conserved miRNAs, their targets, potential transcription factors and effector genes of complete secondary metabolism pathways after 454 pyrosequencing of calyx cDNAs from the Labiate Salvia sclarea L
   "Legrand S, Valot N, Nicole F, Moja S, Baudino S, Jullien F, Magnard JL, Caissard JC, Legendre L"
   "Gene (2010) 450:55-62