Stem-loop tur-mir-10

Accession

MI0019358

Description

Tetranychus urticae tur-mir-10 precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

guguuugaccaacuauugcucuacauuCACCCUGUAGAUCCGAAUUUGUcagaaaauugauuugccacGAAUUCGGCUCUAGAGAGGUUUGuguggugcauaucaugcaucaucuacu
(((..(((.((.....(((.((((((..(((((.((((.((((((((((((((.......))))..)))))))))).)))).)).)))..)))))).))).....))..)))..))).

Structure

-   uu   -c  acuau   u      uC   -  G    U          --    aa 
 gug  uga  ca     ugc cuacau  ACC CU UAGA CCGAAUUUGU  caga  a
 |||  |||  ||     ||| ||||||  ||| || |||| ||||||||||  ||||  u
 cau  acu  gu     acg gguguG  UGG GA AUCU GGCUUAAGca  guuu  u
u   cu   ac  acuau   u      UU   A  G    C          cc    ag 

Annotation confidence Not enough data

Genome context

Unknown

Mature tur-miR-10-5p

• Accession: MIMAT0023026
• Description: Tetranychus urticae tur-miR-10-5p mature miRNA
• Sequence: 28 - CACCCUGUAGAUCCGAAUUUGU - 49
• Evidence: experimental ; Illumina [1]

Mature tur-miR-10-3p

• Accession: MIMAT0023027
• Description: Tetranychus urticae tur-miR-10-3p mature miRNA
• Sequence: 69 - GAAUUCGGCUCUAGAGAGGUUUG - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22113690
   The genome of Tetranychus urticae reveals herbivorous pest adaptations
   "Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouze P, Grbic V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernandez-Crespo P, Diaz I, Martinez M, Navajas M, Sucena E, Magalhaes S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA"
   "Nature (2011) 479:487-492