Stem-loop tur-mir-5727

Accession

MI0019359

Description

Tetranychus urticae tur-mir-5727 precursor miRNA

Gene family

MIPF0001627; mir-5727

Sequence

cugauugugagucuuuuucgaaauuUAGGCAACCAUAAGAAUGACAAuguaauacaguaauuauuGCCGCUCUUAUGAUUGCACGAauuucgcagaagcggcaagcaaucau
.(((((((..((((((((((((((((..((((.(((((((.((.(((((............))))).)).))))))).))))..)))))))).))))).)))..))))))).

Structure

c       ga   -     -        AG    C       A  A     uaaua 
 ugauugu  guc uuuuu cgaaauuU  GCAA CAUAAGA UG CAAug     c
 |||||||  ||| ||||| ||||||||  |||| ||||||| || |||||      
 acuaacg  cgg gaaga gcuuuaAG  CGUU GUAUUCU GC Guuau     a
u       aa   c     c        CA    A       C  C     uaaug 

Annotation confidence Not enough data

Genome context

Unknown

Mature tur-miR-5727-5p

• Accession: MIMAT0023028
• Description: Tetranychus urticae tur-miR-5727-5p mature miRNA
• Sequence: 26 - UAGGCAACCAUAAGAAUGACAA - 47
• Evidence: experimental ; Illumina [1]

Mature tur-miR-5727-3p

• Accession: MIMAT0023029
• Description: Tetranychus urticae tur-miR-5727-3p mature miRNA
• Sequence: 66 - GCCGCUCUUAUGAUUGCACGA - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22113690
   The genome of Tetranychus urticae reveals herbivorous pest adaptations
   "Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouze P, Grbic V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernandez-Crespo P, Diaz I, Martinez M, Navajas M, Sucena E, Magalhaes S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA"
   "Nature (2011) 479:487-492