miRBase entry: tur-mir-12b

Stem-loop tur-mir-12b


Accession
MI0019367
Description
Tetranychus urticae tur-mir-12b precursor miRNA


Sequence

gaugcacaagaggUGAGUAUUUCUCCAGGUACUGAugaguugaguugauUAGUACCUGGAAAAUUAACUCACcucuuguuguauca
((((((((((((((((((((((.(((((((((((((.((.....)).)))))))))))))))))..)))))))))))).)))))).

Structure
-      -            --    C             g  u 
 gaugca caagaggUGAGU  AUUU UCCAGGUACUGAu ag u
 |||||| ||||||||||||  |||| ||||||||||||| || g
 cuaugu guucucCACUCA  UAAA AGGUCCAUGAUua uu a
a      u            AU    -             g  g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tur-miR-12b-5p

Accession MIMAT0023044
Description Tetranychus urticae tur-miR-12b-5p mature miRNA
Sequence 14 - UGAGUAUUUCUCCAGGUACUGA - 35
Evidence experimental
Illumina [1]

Mature tur-miR-12b-3p

Accession MIMAT0023045
Description Tetranychus urticae tur-miR-12b-3p mature miRNA
Sequence 50 - UAGUACCUGGAAAAUUAACUCAC - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22113690
    The genome of Tetranychus urticae reveals herbivorous pest adaptations
    "Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouze P, Grbic V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernandez-Crespo P, Diaz I, Martinez M, Navajas M, Sucena E, Magalhaes S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA"
    "Nature (2011) 479:487-492