Stem-loop tur-mir-5730

Accession

MI0019370

Description

Tetranychus urticae tur-mir-5730 precursor miRNA

Sequence

aUCACCGGGAUAAAGGCAUCUUAucgcuugacuuauccucaucauucccuagucaucaaucgauuCGGUGGCUUUUUCCUCGGUGGA
..((((((((.((((.((((..((((..(((((.................))))).....))))..)))).)))).))).)))))..

Structure

aU     -   U    G    UU    ---cu     uauccuc 
  CACCG GGA AAAG CAUC  Aucg     ugacu       a
  ||||| ||| |||| ||||  ||||     |||||       u
  GUGGC CCU UUUC GUGG  uagc     acuga       c
AG     U   U    G    Cu    uaacu     ucccuua 

Annotation confidence Not enough data

Genome context

Unknown

Mature tur-miR-5730-5p

• Accession: MIMAT0023050
• Description: Tetranychus urticae tur-miR-5730-5p mature miRNA
• Sequence: 2 - UCACCGGGAUAAAGGCAUCUUA - 23
• Evidence: experimental ; Illumina [1]

Mature tur-miR-5730-3p

• Accession: MIMAT0023051
• Description: Tetranychus urticae tur-miR-5730-3p mature miRNA
• Sequence: 66 - CGGUGGCUUUUUCCUCGGUGGA - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22113690
   The genome of Tetranychus urticae reveals herbivorous pest adaptations
   "Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouze P, Grbic V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernandez-Crespo P, Diaz I, Martinez M, Navajas M, Sucena E, Magalhaes S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA"
   "Nature (2011) 479:487-492