Stem-loop tur-mir-993b

Accession

MI0019371

Description

Tetranychus urticae tur-mir-993b precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

aauggguaaagucguuagcgaguUACCCUGUGAACCCGGGCUUUUGuagaccucuucagagucaGAAGCUCGUUUUUACAGGUUUUCuugaaaaugaucauuucucgu
.(((((....((((((..((((..(.((((((((..((((((((((.....(((....))).))))))))))..)))))))).)..))))..)))))).....)))))

Structure

a     -uaaa      ag    uU C        CC          uagac   u 
 auggg     gucguu  cgag  A CCUGUGAA  CGGGCUUUUG     cuc u
 |||||     ||||||  ||||  | ||||||||  ||||||||||     |||  
 ugcuc     uaguaa  guuC  U GGACAUUU  GCUCGAAGac     gag c
-     uuuac      aa    UU U        UU          ----u   a 

Annotation confidence Not enough data

Genome context

Unknown

Mature tur-miR-993b-5p

• Accession: MIMAT0023052
• Description: Tetranychus urticae tur-miR-993b-5p mature miRNA
• Sequence: 24 - UACCCUGUGAACCCGGGCUUUUG - 46
• Evidence: experimental ; Illumina [1]

Mature tur-miR-993b-3p

• Accession: MIMAT0023053
• Description: Tetranychus urticae tur-miR-993b-3p mature miRNA
• Sequence: 65 - GAAGCUCGUUUUUACAGGUUUUC - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22113690
   The genome of Tetranychus urticae reveals herbivorous pest adaptations
   "Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouze P, Grbic V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernandez-Crespo P, Diaz I, Martinez M, Navajas M, Sucena E, Magalhaes S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA"
   "Nature (2011) 479:487-492