Stem-loop tur-mir-5729a

Accession

MI0019372

Description

Tetranychus urticae tur-mir-5729a precursor miRNA

Gene family

MIPF0001473; mir-5729

Literature search

1 open access papers mention tur-mir-5729a
(1 sentences)

Sequence

acaagcauuucuuauACCCUGACUUGUGGUAAGAUAAGCaaaggcuagaggugacgaccucaaagucugcgGAUCGAACCCAGUCAGGGUGaaaaacaaaaugaaccuuga
.(((((((((....((((((((((.(.(((..(((..(((..((((.(((((....)))))..)))))))..)))..)))))))))))))).......)))))...)))).

Structure

a    ---     ---cuua          U U   AA   AA   aa    -a     g 
 caag   cauuu       uACCCUGACU G GGU  GAU  GCa  ggcu  gaggu a
 ||||   |||||       |||||||||| | |||  |||  |||  ||||  |||||  
 guuc   guaaa       GUGGGACUGA C CCA  CUA  cgu  cuga  cucca c
a    caa     acaaaaa          - -   AG   Gg   --    aa     g 

Annotation confidence Not enough data

Genome context

Unknown

Mature tur-miR-5729a-5p

• Accession: MIMAT0023054
• Description: Tetranychus urticae tur-miR-5729a-5p mature miRNA
• Sequence: 16 - ACCCUGACUUGUGGUAAGAUAAGC - 39
• Evidence: experimental ; Illumina [1]

Mature tur-miR-5729a-3p

• Accession: MIMAT0023055
• Description: Tetranychus urticae tur-miR-5729a-3p mature miRNA
• Sequence: 72 - GAUCGAACCCAGUCAGGGUG - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22113690
   The genome of Tetranychus urticae reveals herbivorous pest adaptations
   "Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouze P, Grbic V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernandez-Crespo P, Diaz I, Martinez M, Navajas M, Sucena E, Magalhaes S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA"
   "Nature (2011) 479:487-492