Stem-loop tur-mir-993a-1

Accession

MI0019374

Description

Tetranychus urticae tur-mir-993a-1 precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

ggaagccauuagcgaguUACCCUGUAGACCCGGGCUUUUGuagacccgaaagagucaGAAGCUCGUUUCUACAGGUUUCucgaugaugugugcca
((..(((((((.((((..(((.((((((..(((((((((...(((.(....).))))))))))))..)))))))))..)))).))))).)).)).

Structure

-  aa  -     g    uU   C      CC         Gua   c g 
 gg  gc cauua cgag  ACC UGUAGA  CGGGCUUUU   gac c a
 ||  || ||||| ||||  ||| ||||||  |||||||||   ||| |  
 cc  ug guagu gcuC  UGG ACAUCU  GCUCGAAGa   cug g a
a  -g  u     a    UU   -      UU         ---   a a 

Annotation confidence Not enough data

Genome context

Unknown

Mature tur-miR-993a-5p

• Accession: MIMAT0023058
• Description: Tetranychus urticae tur-miR-993a-5p mature miRNA
• Sequence: 18 - UACCCUGUAGACCCGGGCUUUUG - 40
• Evidence: experimental ; Illumina [1]

Mature tur-miR-993a-3p

• Accession: MIMAT0023059
• Description: Tetranychus urticae tur-miR-993a-3p mature miRNA
• Sequence: 58 - GAAGCUCGUUUCUACAGGUUUC - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22113690
   The genome of Tetranychus urticae reveals herbivorous pest adaptations
   "Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouze P, Grbic V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernandez-Crespo P, Diaz I, Martinez M, Navajas M, Sucena E, Magalhaes S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA"
   "Nature (2011) 479:487-492