Stem-loop tur-mir-317

Accession

MI0019375

Description

Tetranychus urticae tur-mir-317 precursor miRNA

Gene family

MIPF0000144; mir-317

Sequence

agggaaaugguuugcUGGGUACCACGCUGGGCUCACAucuuaauuguuauuauauugggUGAACACAGCUGGUGGUAUCUCAGuuaaccuuucuca
.((((((.((((.((((((((((((((((.(.((((....((((....))))......)))).).))))..)))))))).)))).)))))))))).

Structure

a      u    u    -        --    G C    --Aucu    u 
 gggaaa gguu gcUG GGUACCAC  GCUG G UCAC      uaau g
 |||||| |||| |||| ||||||||  |||| | ||||      ||||  
 cucuuu ccaa uGAC CUAUGGUG  CGAC C AGUg      auua u
a      -    u    U        GU    A A    gguuau    u 

Annotation confidence Not enough data

Genome context

Unknown

Mature tur-miR-317-5p

• Accession: MIMAT0023060
• Description: Tetranychus urticae tur-miR-317-5p mature miRNA
• Sequence: 16 - UGGGUACCACGCUGGGCUCACA - 37
• Evidence: experimental ; Illumina [1]

Mature tur-miR-317-3p

• Accession: MIMAT0023061
• Description: Tetranychus urticae tur-miR-317-3p mature miRNA
• Sequence: 60 - UGAACACAGCUGGUGGUAUCUCAG - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22113690
   The genome of Tetranychus urticae reveals herbivorous pest adaptations
   "Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouze P, Grbic V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernandez-Crespo P, Diaz I, Martinez M, Navajas M, Sucena E, Magalhaes S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA"
   "Nature (2011) 479:487-492