miRBase entry: tur-mir-210-1

Stem-loop tur-mir-210-1


Accession
MI0019380
Description
Tetranychus urticae tur-mir-210-1 precursor miRNA
Gene family
MIPF0000086; mir-210


Sequence

auugaaaugaucuguuAGUUGUUUGACCACGACACAAGGuugcauuuaaaaucuuuuuaucuUUGUGCGUGUUUCAAGCGGCUGuugguucauuuuaac
.(((((((((.(((.(((((((((((.((((.(((((((.....................)))))))))))..))))))))))).))).))))))))).

Structure
a         u   u           -C    A       uugcauuua 
 uugaaauga cug uAGUUGUUUGA  CACG CACAAGG         a
 ||||||||| ||| |||||||||||  |||| |||||||         a
 aauuuuacu ggu GUCGGCGAACU  GUGC GUGUUuc         a
c         u   u           UU    -       uauuuuucu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tur-miR-210-5p

Accession MIMAT0023070
Description Tetranychus urticae tur-miR-210-5p mature miRNA
Sequence 17 - AGUUGUUUGACCACGACACAAGG - 39
Evidence experimental
Illumina [1]

Mature tur-miR-210-3p

Accession MIMAT0023071
Description Tetranychus urticae tur-miR-210-3p mature miRNA
Sequence 63 - UUGUGCGUGUUUCAAGCGGCUG - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22113690
    The genome of Tetranychus urticae reveals herbivorous pest adaptations
    "Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouze P, Grbic V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernandez-Crespo P, Diaz I, Martinez M, Navajas M, Sucena E, Magalhaes S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA"
    "Nature (2011) 479:487-492