Stem-loop tur-mir-5728-1

Accession

MI0019387

Description

Tetranychus urticae tur-mir-5728-1 precursor miRNA

Gene family

MIPF0001558; mir-5728

Sequence

agaauguuucugcaugauucagACAGCCGUAUGAGUGGCAGAAUAuuacuauaauaauuaUUUGCCACUCAUACGGAUGCUagaaucuuguaaguaccaauuca
.((((....(((((.(((((((.((.((((((((((((((((..((((......))))..)))))))))))))))).)))).))))).))).)).....)))).

Structure

a    -guuu  -   u     -  A  G                AU    cu 
 gaau     cu gca gauuc ag CA CCGUAUGAGUGGCAGA  Auua  a
 ||||     || ||| ||||| || || ||||||||||||||||  ||||   
 cuua     ga ugu cuaag UC GU GGCAUACUCACCGUUU  uaau  u
a    accau  a   u     a  -  A                au    aa 

Annotation confidence Not enough data

Genome context

Unknown

Mature tur-miR-5728-3p

• Accession: MIMAT0023033
• Description: Tetranychus urticae tur-miR-5728-3p mature miRNA
• Sequence: 61 - UUUGCCACUCAUACGGAUGCU - 81
• Evidence: experimental ; Illumina [1]

Mature tur-miR-5728-1-5p

• Accession: MIMAT0023032
• Description: Tetranychus urticae tur-miR-5728-1-5p mature miRNA
• Sequence: 23 - ACAGCCGUAUGAGUGGCAGAAUA - 45
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22113690
   The genome of Tetranychus urticae reveals herbivorous pest adaptations
   "Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouze P, Grbic V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernandez-Crespo P, Diaz I, Martinez M, Navajas M, Sucena E, Magalhaes S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA"
   "Nature (2011) 479:487-492