Stem-loop tur-mir-9-1

Accession

MI0019388

Description

Tetranychus urticae tur-mir-9-1 precursor miRNA

Gene family

MIPF0000014; mir-9

Literature search

1 open access papers mention tur-mir-9-1
(1 sentences)

Sequence

gcugauuuccucaUCUUUGGUUAUUUAGCUUUCUGAuugcccguacaaacaucAUAAAGCUAUUUAACCAAAUUUGaggacccagcu
((((...((((((..((((((((..(((((((.((((((......))...)))).)))))))..))))))))..))))))..)))).

Structure

-    auu      UC        UU       C    ---  cc 
 gcug   uccuca  UUUGGUUA  UAGCUUU UGAu   ug  c
 ||||   ||||||  ||||||||  ||||||| ||||   ||   
 cgac   aggaGU  AAACCAAU  AUCGAAA Acua   ac  g
u    -cc      UU        UU       U    caa  au 

Annotation confidence Not enough data

Genome context

Unknown

Mature tur-miR-9-5p

• Accession: MIMAT0023082
• Description: Tetranychus urticae tur-miR-9-5p mature miRNA
• Sequence: 14 - UCUUUGGUUAUUUAGCUUUCUGA - 36
• Evidence: experimental ; Illumina [1]

Mature tur-miR-9-3p

• Accession: MIMAT0023083
• Description: Tetranychus urticae tur-miR-9-3p mature miRNA
• Sequence: 54 - AUAAAGCUAUUUAACCAAAUUUG - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22113690
   The genome of Tetranychus urticae reveals herbivorous pest adaptations
   "Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouze P, Grbic V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernandez-Crespo P, Diaz I, Martinez M, Navajas M, Sucena E, Magalhaes S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA"
   "Nature (2011) 479:487-492