Stem-loop tur-mir-92

Accession

MI0019391

Description

Tetranychus urticae tur-mir-92 precursor miRNA

Gene family

MIPF0000013; mir-25

Literature search

1 open access papers mention tur-mir-92
(13 sentences)

Sequence

guccauuggaaucucauacugaaacAGGCCUAGACUGGUGUCAAUAUUucauauuuugauuaucaucaUAUUGCACUCGUCCCGGCCUGUuacgguauuuaaucguguuuuuagugcucg
(..((((((((.(.(((((((.((((((((..(((.((((.((((((...(((.......)))....)))))))))).)))..)))))))).))))))......).).))))))))..).

Structure

- uc        u u ------      a        UA   U    U      -Uuc   uu 
 g  cauuggaa c c      auacug aacAGGCC  GAC GGUG CAAUAU    aua  u
 |  |||||||| | |      |||||| ||||||||  ||| |||| ||||||    |||  u
 c  gugauuuu g g      uauggc uUGUCCGG  CUG UCAC GUUAUa    uau  g
g uc        u u cuaauu      a        CC   C    -      cuac   ua 

Annotation confidence Not enough data

Genome context

Unknown

Mature tur-miR-92-5p

• Accession: MIMAT0023086
• Description: Tetranychus urticae tur-miR-92-5p mature miRNA
• Sequence: 26 - AGGCCUAGACUGGUGUCAAUAUU - 48
• Evidence: experimental ; Illumina [1]

Mature tur-miR-92-3p

• Accession: MIMAT0023087
• Description: Tetranychus urticae tur-miR-92-3p mature miRNA
• Sequence: 69 - UAUUGCACUCGUCCCGGCCUGU - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22113690
   The genome of Tetranychus urticae reveals herbivorous pest adaptations
   "Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouze P, Grbic V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernandez-Crespo P, Diaz I, Martinez M, Navajas M, Sucena E, Magalhaes S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA"
   "Nature (2011) 479:487-492