Stem-loop tur-mir-34

Accession

MI0019396

Description

Tetranychus urticae tur-mir-34 precursor miRNA

Gene family

MIPF0000039; mir-34

Sequence

augguugcgaugugUGGCAGUGUGGUUAGCUGGUUguguaauauaaacaacaaCCACUGAUUGCACUGCCCAUAcauccgaugccga
..(((..((((((((((((((((((((((.(((((((((.......)).))))))))))))))))))).)))))))).))..)))..

Structure

au   ug  -        -            C       -  aa 
  ggu  cg augugUGG CAGUGUGGUUAG UGGUUgu gu  u
  |||  || |||||||| |||||||||||| ||||||| ||  a
  ccg  gc uacAUACC GUCACGUUAGUC ACCaaca ca  u
ag   ua  c        C            -       a  aa 

Annotation confidence Not enough data

Genome context

Unknown

Mature tur-miR-34-5p

• Accession: MIMAT0023096
• Description: Tetranychus urticae tur-miR-34-5p mature miRNA
• Sequence: 15 - UGGCAGUGUGGUUAGCUGGUU - 35
• Evidence: experimental ; Illumina [1]

Mature tur-miR-34-3p

• Accession: MIMAT0023097
• Description: Tetranychus urticae tur-miR-34-3p mature miRNA
• Sequence: 54 - CCACUGAUUGCACUGCCCAUA - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22113690
   The genome of Tetranychus urticae reveals herbivorous pest adaptations
   "Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouze P, Grbic V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernandez-Crespo P, Diaz I, Martinez M, Navajas M, Sucena E, Magalhaes S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA"
   "Nature (2011) 479:487-492