Stem-loop tur-mir-279

Accession

MI0019403

Description

Tetranychus urticae tur-mir-279 precursor miRNA

Gene family

MIPF0000184; mir-279

Sequence

cuggacacuuugacuggAUGAAUGCGUUUCUAGACCAUGuucauguugaacuauucaUGACUAGAUCCACAUUCAUCCAgacagccaa
.(((.....(((.(((((((((((.(..(((((..((((((((...))))).....))).)))))..).))))))))))).)))))).

Structure

c   acacu   a           C UU     AC   -----     u 
 ugg     uug cuggAUGAAUG G  UCUAG  CAU     Guuca  
 |||     ||| ||||||||||| |  |||||  |||     ||||| g
 acc     gac gACCUACUUAC C  AGAUC  GUa     caagu  
a   -----   a           A CU     -A   cuuau     u 

Annotation confidence Not enough data

Genome context

Unknown

Mature tur-miR-279-5p

• Accession: MIMAT0023106
• Description: Tetranychus urticae tur-miR-279-5p mature miRNA
• Sequence: 18 - AUGAAUGCGUUUCUAGACCAUG - 39
• Evidence: experimental ; Illumina [1]

Mature tur-miR-279-3p

• Accession: MIMAT0023107
• Description: Tetranychus urticae tur-miR-279-3p mature miRNA
• Sequence: 58 - UGACUAGAUCCACAUUCAUCCA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22113690
   The genome of Tetranychus urticae reveals herbivorous pest adaptations
   "Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouze P, Grbic V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernandez-Crespo P, Diaz I, Martinez M, Navajas M, Sucena E, Magalhaes S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA"
   "Nature (2011) 479:487-492