miRBase entry: ola-mir-221

Stem-loop ola-mir-221


Accession
MI0019415
Description
Oryzias latipes ola-mir-221 precursor miRNA
Gene family
MIPF0000051; mir-221


Sequence

ccguccaugaggaguucuggaccuggcauacaguguaguauucugugugcguccgucuacAGCUACAUUGUCUGCUGGGUUUCaggccuccacucaagucucg
..........((((.(((((((((((((.(((((((((....(((((.((....)).)))))))))))))).))))))).)))))).))))............

Structure
--ccguccauga    u      -       u         uauu     u  g 
            ggag ucugga ccuggca acaguguag    cugug gc u
            |||| |||||| ||||||| |||||||||    ||||| ||  
            ccuc ggaCUU GGGUCGU UGUUACAUC    GAcau ug c
gcucugaacuca    c      U       C         ----     c  c 


Annotation confidence Not enough data
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Genome context
2: 28254368-28254470 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ola-mir-221
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ola-miR-221

Accession MIMAT0022530
Description Oryzias latipes ola-miR-221 mature miRNA
Sequence 61 - AGCUACAUUGUCUGCUGGGUUUC - 83
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8