Stem-loop ola-mir-18-1

Accession

MI0019417

Description

Oryzias latipes ola-mir-18-1 precursor miRNA

Gene family

MIPF0000001; mir-17

Sequence

cauacgauguacugucuuugugcUAAGGUGCAUCUAGUGCAGAUAGugaaauagacuagcaccuacugcccuaagugcuccuucuggcauaaggggcuguaauaug
......((((((.(((((((((((((((.((((.(((.((((.(((((...........)).))))))).))).)))).)))..)))))))).)))).)).)))).

Structure

cauacg    -  u    -        --   U    C   U    A   -  aaau 
      augu ac gucu uugugcUA  AGG GCAU UAG GCAG UAG ug    a
      |||| || |||| ||||||||  ||| |||| ||| |||| ||| ||    g
      uaua ug cggg aauacggu  ucc cgug auc cguc auc ac    a
-----g    a  u    g        cu   u    a   c    -   c  gauc 

Annotation confidence Not enough data

Genome context

3: 15107452-15107557 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ola-mir-18-1

Mature ola-miR-18

• Accession: MIMAT0022532
• Description: Oryzias latipes ola-miR-18 mature miRNA
• Sequence: 24 - UAAGGUGCAUCUAGUGCAGAUAG - 46
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8